• Overview of Chinese core journals
  • Chinese Science Citation Database(CSCD)
  • Chinese Scientific and Technological Paper and Citation Database (CSTPCD)
  • China National Knowledge Infrastructure(CNKI)
  • Chinese Science Abstracts Database(CSAD)
  • JST China
  • SCOPUS
SUN Zhe-Xin, CUI Teng-Fei, CHU Xiang-Qiang. Neutron spin echo spectrometer: advanced in studying protein domain motions[J]. PHYSICS, 2024, 53(3): 174-184. DOI: 10.7693/wl20240306
Citation: SUN Zhe-Xin, CUI Teng-Fei, CHU Xiang-Qiang. Neutron spin echo spectrometer: advanced in studying protein domain motions[J]. PHYSICS, 2024, 53(3): 174-184. DOI: 10.7693/wl20240306

Neutron spin echo spectrometer: advanced in studying protein domain motions

More Information
  • Received Date: January 17, 2024
  • Available Online: March 15, 2024
  • With protein being one of the most important components in biological systems, it is essential to know the dynamics of the internal motions of proteins for further understanding of the mechanisms of life. Utilizing the unique properties of thermal neutron scattering with hydrogen isotopes to study the dynamics inside proteins takes full advantage of the low beam energy and high spatiotemporal resolution of neutron spin echo spectroscopy over other experimental methods. This cutting-edge discipline spans nuclear physics and technology, non-equilibrium statistical physics, molecular biology, and proteomics. There are plenty of unknowns and challenges, as well as opportunities to peek at the mysteries of life. In this article, we review the principles of neutron spin echo spectroscopy, the history of its development and its advantages with some examples of experiments that have been performed on protein domain dynamics, then discuss various future applications.
  • [1]
    Mezei F. Neutron Spin Echo. In:Lecture Notes in Physics, Vol.128. Springer, 1980
    [2]
    韩晶晶, 储祥蔷. 物理, 2019, 48(12): 780
    [3]
    Shrestha U R, Mamontov E, O' Neill H M et al. The Innovation, 2022, 3(1): 100199
    [4]
    Chu X Q, Gajapathy M, Weiss K L et al. J. Phys. Chem. B, 2012, 116(33): 9917
    [5]
    Callaway D J, Bu Z M. Curr. Opin. Struct. Biol., 2017, 42: 1
    [6]
    Schrödinger E. What is Life? The Physical Aspect of the Living Cell. Cambridge University Press, 1944
    [7]
    Keller T, Golub R, Gähler R. In: Pike R, Sabatier P eds. Scattering. Academic Press, 2002. pp.1264—1286
    [8]
    Jiang C Y. AAPPS Bull., 2023, 33(1): 21
    [9]
    Coulter K P, McDonald A B, Happer W et al. Nuclear Instruments and Methods in Physics Research Section A:Accelerators, Spectrometers, Detectors and Associated Equipment, 1988, 270(1): 90
    [10]
    Greene G L, Thompson A K, Dewey M S. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 1995, 356(2): 177
    [11]
    Hino M, Oda T, Yamada N L et al. Journal of Nuclear Science and Technology, 2017, 54(11): 1223
    [12]
    Schneider M, Schanzer C, Böni P et al. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 2020, 976: 164272
    [13]
    Maruyama R, Yamazaki D, Akutsu K et al. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 2018, 888: 70
    [14]
    Luo X, Cui T, Chu X. Front. Phys., 2023, 11: 1279007
    [15]
    Драбкин ГМ, Забидаров Е И, Касман Я А et al. ЖЭТФ, 1969, 29: 261(in Russian)
    [16]
    Mezei F. Z. Physik., 1972, 255(2): 146
    [17]
    Golub R, Gähler R. Physics Letters A, 1987, 123(1): 43
    [18]
    Nagao M, Yamada N L, Kawabata Y et al. Physica B, 2006, 385-386: 1118
    [19]
    Krautloher M, Kindervater J, Keller T et al. W. Review of Scientific Instruments, 2016, 87(12): 125110
    [20]
    Franz C, Soltwedel O, Fuchs C et al. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 2019, 939: 22
    [21]
    Farago B. Physica B, 1999, 267-268: 270
    [22]
    Schleger P, Alefeld B, Barthelemy J F et al. Physica B, 1997, 241-243: 164
    [23]
    Fouquet P,Ehlers G,Farago B et al. Journal of Neutron Research, 2007, 15(1): 39
    [24]
    Zanotti J M, Combet S, Klimko S et al. Neutron News, 2011, 22(4): 24
    [25]
    Monkenbusch M. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 2010, 21(2): 30
    [26]
    Rosov N,Rathgeber S,Monkenbusch M. In:Scattering from Polymers, Vol 739. ACS Symposium Series. American Chemical Society, 1999. pp.103—116
    [27]
    Endo H, Oda T, Hino M et al. Physica B, 2019, 564: 91
    [28]
    Kajimoto R, Yokoo T, Nakamura M et al. Physica B, 2019, 562: 148
    [29]
    Holderer O, Monkenbusch M, Schätzler R et al. Measurement Science and Technology, 2008, 19(3): 034022
    [30]
    Holderer O, Ivanova O. JLSRF, 2015, 1: A11
    [31]
    Pasini S, Holderer O, Kozielewski T et al. Rev. Sci. Inst., 2019, 90(4): 043107
    [32]
    Georgii R, Weber T, Brandl G et al. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 2018, 881: 60
    [33]
    Groitl F, Keller T, Quintero-Castro D L et al. Review of Scientific Instruments, 2015, 86(2): 025110
    [34]
    Pappas C, Triolo A, Mezei F et al. Neutron Spin Echo Spectroscopy: Basics, Trends and Applications. In: Mezei F, Pappas C, Gutberlet T eds. Lecture Notes in Physics. Springer,2003. pp.35—47
    [35]
    iNSE ISSP, UTokyo. 中性子スピンエコー分光器. 2023. https://www.issp.u-tokyo.ac.jp/labs/neutron/inst/NSE/index.html (in Japanese)
    [36]
    Takeda T,Komura S,Seto H et al. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 1995, 364(1): 186
    [37]
    Liu B, Wang Z, Wang Y et al. J. Inst., 2020, 15(04): P04007
    [38]
    Biehl R, Monkenbusch M, Richter D. Soft Matter, 2011, 7(4): 1299
    [39]
    Bu Z M, Callaway D J E. Advances in Protein Chemistry and Structural Biology. In: Donev R, ed. Protein Structure and Diseases, Vol 83. Academic Press, 2011. pp.163—221
    [40]
    Smolin N, Biehl R, Kneller G R et al. Biophysical Journal, 2012, 102(5): 1108
    [41]
    Pan J, Cheng X, Sharp M et al. Soft Matter, 2014, 11(1): 130
    [42]
    Liu Y. Phys. Rev. E, 2017, 95(2): 020501
    [43]
    Bu Z M, Biehl R, Monkenbusch M et al. Proc. Natl. Acad. Sci. USA, 2005, 102(49): 17646
    [44]
    Liu Y. Current Opinion in Colloid & Interface Science, 2019, 42: 147
    [45]
    Ankner J F, Heller W T, Herwig K W et al. Curr. Protoc. Protein Sci., 2013, 72: 17.16.1
    [46]
    Hore M J A, Hammouda B, Li Y et al. Macromolecules, 2013, 46(19): 7894
    [47]
    Bellissent-Funel M C, Daniel R, Durand D et al. J. Am. Chem. Soc., 1998, 120(29): 7347
    [48]
    Gall A, Seguin J, Bellissent-Funel M C et al. Nanosecond Protein Dynamics of the RC and LH Complexes as Measured by Coherent Inelastic Neutron Spin-Echo Spectroscopy. In: Garab G ed. Photosynthesis:Mechanisms and Effects:Volume I-V: Proceedings of the XIth International Congress on Photosynthesis. Springer Netherlands, 1998. pp.4373—4376
    [49]
    Farago B, Li J, Cornilescu G et al. Biophysical Journal, 2010, 99(10): 3473
    [50]
    Inoue R, Biehl R, Rosenkranz T et al. Biophysical Journal, 2010, 99(7): 2309
    [51]
    Callaway D J E, Bu Z M. Methods Enzymol, 2016, 566: 253
    [52]
    Abraham M J, Murtola T, Schulz R et al. SoftwareX, 2015, 1-2: 19
    [53]
    Hong L, Smolin N, Smith J C. Phys. Rev. Lett., 2014, 112(15): 158102
    [54]
    Hong L, Sharp M A, Poblete S et al. Biophys J., 2014, 107(2): 393
    [55]
    Stingaciu L R, Ivanova O, Ohl M et al. Sci. Rep., 2016, 6(1): 22148
    [56]
    Katava M, Maccarini M, Villain G et al. Sci. Rep., 2017, 7(1): 41092
    [57]
    Hong L, Jain N, Cheng X et al. Sci. Adv., 2016, 2(10): e1600886
    [58]
    Nicholl I D, Matsui T, Weiss T M et al. Biophysical Journal, 2018, 115(4): 642
    [59]
    Farago B, Nicholl I D, Wang S et al. Proc. Natl. Acad. Sci. USA, 2021, 118(13): e2025012118
    [60]
    Sun G, Zhang C, Chen B et al. Neutron News, 2016, 27(4): 21
    [61]
    Carpenter J M. Nat. Rev. Phys., 2019, 1(3): 177
    [62]
    Shukla M,Ray N,Patel T. Major Neutron Source Facilities Across the Globe In: Aswal DK, Sarkar P S, Kashyap Y S eds. Neutron Imaging: Basics, Techniques and Applications. Springer, 2022. pp.97—162
    [63]
    Thompson A P, Aktulga H M, Berger R et al. Computer Physics Communications, 2022, 271: 108171

Catalog

    Article views (259) PDF downloads (1502) Cited by()

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return